All functions
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as_igraph()
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Convert gene list to igraph object |
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get_external_names()
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Convert ENSEMBL IDs to external gene names |
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plot_graph() plot_pathway()
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Plot a gene network graph |
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prune()
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Pruning of a gene list by interaction distance to seed genes |
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pwcuratr
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A package to facilitate curation of functional gene networks |
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query_participating_genes()
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Query reactome for all participating genes in a set of pathways |
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query_reactome_pathways()
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Query reactome for involved biological pathways |
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start_shiny_app()
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Interactive pathway curation |
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tbl_ensembl
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ENSEMBL ID to gene name |
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tbl_ensembl2reactome
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ENSEMBL ID to reactome.org pathway |
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tbl_reactome_interactions
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Function gene-gene interactions |